Bits & Bites #4: Introduction to the GNPS ecosystem - tools, visualizations, and data

Event Date


Participant prerequisites: GNPS Account, no programming experience necessary.

Short description of the course: We want to familiarize the entire community on how to look at their data using classical molecular networking on GNPS by reanalyzing public MassIVE data with classical molecular networking, visualizing raw mass spec data with GNPS Dashboard, and searching/contextualizing MS/MS data with MASST. The goals of the short course are to: 

  • Select spectrum files and metadata from MassIVE public dataset
  • Run classical molecular network workflow
  • Qualitatively compare between cohorts with molecular networks
  • Visualize LC/MS Data Interactively - GNPS Dashboard
  • Search Public Data with MASSTIdentify putative compounds
  • Visualize your molecular families

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