Single Cell RNA-Seq Bioinformatics Workshops at UC Davis and at UCSF

Now in our 12th year of training researchers, the UC Davis Bioinformatics Core invites you to attend one or more of our 2019 workshops. The following workshops are suitable for beginners and are also of interest to those with some data analysis experience. Click here for more information and to register.

Our popular single-cell RNA-Seq workshop will be offered in two locations this summer:

June 24-27: Single-Cell RNA-Seq Workshop @ UC Davis

July 1-3: Single-Cell RNA-Seq Workshop @ UCSF

This workshop will cover experimental design, data generation, and analysis of single-cell RNA sequencing data (primarily generated using the 10x platform) on the command line and within the R statistical programming language. Participants will explore software and protocols, create and modify workflows, and diagnose/treat problematic data utilizing high-performance computing services. The primary packages used for the analyses will be 10x software (for sequence reads to counts) and the R packages (e.g., Seurat) for downstream analysis.

The same topics and materials will be covered at both locations.  However, the UCSF workshop will be presented at an accelerated pace to fit everything into three days.

Important Note:  The single cell RNA-Seq workflows are specific to single cell experiments. If you will be conducting traditional RNA-Seq experiments using RNA isolated from tissues, blood, etc. you should attend our RNA-Seq workshop:

August 19-23: RNA-Seq Workshop @ UC Davis

This popular workshop contains a rich collection of lectures and hands-on sessions, covering both theory and tools associated with command-line RNA-Seq data analysis. Topics include experimental design, cost estimation, data generation, and analysis of RNA-Seq data generated on the Illumina sequencing platform, as well as post differential expression analyses, such as gene set enrichment analysis, Gene Ontology/Pathway analysis, and generation of relevant figures and tables.

Participants will explore software and protocols, create and modify workflows, and diagnose/treat problematic data utilizing high performance computing services. Exercises will be performed with provided datasets, using command-line interaction and with RStudio.  

This workshop does not cover single-cell RNA-Seq.

Register here!

Click here if you would like to take a look at the documentation from previous workshops.

Questions?  Contact us at training.bioinformatics@ucdavis.edu

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