WebSIDD Calculations (Advanced)

The maximum length of DNA sequence webSIDD accepts is 10 KB. For analysis of longer sequences, please make a request to have your sequence analysed. The graphical output of this program is intended to give a quick review of the SIDD profile of your sequence. Your results will not be stored on our server, so it is strongly recommended that you save the output of your analysis.
Questions concerning SIDD Computing should be directed to Dr. Craig J. Benham. Documentation for using this form is available here.Papers using the SIDD database should cite Craig J. Benham and Chengpeng Bi, 2003. Papers using WebSIDD should cite Bi, C.-P. and Benham, C.J.(2004) WebSIDD: Server for Prediction of the Stress-induced Duplex Destabilized Sites in Superhelical DNA, Bioinformatics, 20, 1477-1479.

DNA Type: circular linear	Open Region Size:  (bp)
Energetic Type: copolymeric near neighbor	Salt Concentration: (M)
Set Temperature: (Kelvin Deg)	Superhelix Density:
Profile Options:  graphic only text and graphic text only	Threshold Energy:   (kcal)
Name the sequence:	Energy Cutoff: level 1 level 2 level 3 level 4 level 5
DNA Sequence (copy and paste in the text area):
Output Control:   dna sequence parameter set states ensemble quantities

 

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Comments or questions to cjbenham@ucdavis.edu