Craig J Benham

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Molecular Type: linear dna circular dna

Energetic Type: near neighbor copolymeric

Energy Cutoff:

Name the sequence:

DNA Sequence*: copy and paste your sequence in the below area:

1 AGCTTGTTTG GCCGTTTTAG GGTTTGTTGG AATTTTTTTT TCGTCTATGT 
51 ACTTGTGAAT TATTTCACGT TTGCCATTAC CGGTTCTCCA TAGGGTGATG 
101 TTCATTAGCA GTGGTGATAG GTTAATTTTC ACCATCTCTT ATGCGGTTGA 
151 ATAGTCACCT CTGAACCACT TTTTCCTCCA GTAACTCCTC TTTCTTCGGA 
201 CCTTCTGCAG CCAACCTGAA AGAATAACAA GGAGGTGGCT GGAAACTTGT 
251 TTTAAGGAAC CGCCTGTCCT TCCCCCGCTG GAAACCTTGC ACCTCGGACG 
301 CTCCTGCTCC TGCCCCCACC TGACCCCCGC CCTCGTTGAC ATCCAGGCGC 
351 GATGATCTCT GCTGCCAGTA GAGGGCACAC TTACTTTACT TTCGCAAACC 
401 TGAACGCGGG TGCTGCCCAG AGAGGGGGCG GAGGGAAAGA CGCTTTGCAG 
451 CAAAATCCAG CATAGCGATT GGTTGCTCCC CGCGTTTGCG GCAAAGGCCT 
501 GGAGGCAGGA GTAATTTGCA ATCCTTAAAG CTGAATTGTG CAGTGCATCG 
551 GATTTGGAAG CTACTATATT CACTTAACAC TTGAACGCTG AGCTGCAAAC 
601 TCAACGGGTA ATAACCCATC TTGAACAGCG TACATGCTAT ACACACACCC 
651 CTTTCCCCCG AATTGTTTTC TCTTTTGGAG GTGGTGGAGG GAGAGAAAAG 
701 TTTACTTAAA ATGCCTTTGG GTGAGGGACC AAGGATGAGA AGAATGTTTT 
751 TTGTTTTTCA TGCCGTGGAA TAACACAAAA TAAAAAATCC CGAGGGAATA 
801 TACATTATAT ATTAAATATA GATCATTTCA GGGAGCAAAC AAATCATGTG 
851 TGGGGCTGGG CAACTAGCTG AGTCGAAGCG TAAATAAAAT GTGAATACAC 
901 GTTTGCGGGT TACATACAGT GCACTTTCAC TAGTATTCAG AAAAAATTGT 
951 GAGTCAGTGA ACTAGGAAAT TAATGCCTGG AAGGCAGCCA AATTTTAATT 
1001 AGCTCAAGAC TCCCCCCCCC CCCCAAAAAA AGGCACGGAA GTAATACTCC 
1051 TCTCCTCTTC TTTGATCAGA ATCGATGCAT TTTTTGTGCA TGACCGCATT 
1101 TCCAATAATA AAAGGGGAAA GAGGACCTGG AAAGGAATTA AACGTCCGGT 
1151 TTGTCCGGGG AGGAAAGAGT TAACGGTTTT TTTCACAAGG GTCTCTGCTG 
1201 ACTCCCCCGG CTCGGTCCAC AAGCTCTCCA CTTGCCCCTT TTAGGAAGTC 
1251 CGGTCCCGCG GTTCGGGTAC CCCCTGCCCC TCCCATATTC TCCCGTCTAG 
1301 CACCTTTGAT TTCTCCCAAA CCCGGCAGCC CGAGACTGTT GCAAACCGGC 
1351 GCCACAGGGC GCAAAGGGGA TTTGTCTCTT CTGAAACCTG GCTGAGAAAT 
1401 TGGGAACTCC GTGTGGGAGG CGTGGGGGTG GGACGGTGGG GTACAGACTG 
1451 GCAGAGAGCA GGCAACCTCC CTCTCGCCCT AGCCCAGCTC TGGAACAGGC 
1501 AGACACATCT CAGGGCTAAA CAGACGCCTC CCGCACGGGG CCCCACGGAA 
1551 GCCTGAGCAG GCGGGGCAGG AGGGGCGGTA TCTGCTGCTT TGGCAGCAAA 
1601 TTGGGGGACT CAGTCTGGGT GGAAGGTATC CAATCCAGAT AGCTGTGCAT 
1651 ACATAATGCA TAATACATGA CTCCCCCCAA CAAATGCAAT GGGAGTTTAT 
1701 TCATAACGCG CTCTCCAAGT ATACGTGGCA ATGCGTTGCT GGGTTATTTT 
1751 AATCATTCTA GGCATCGTTT TCCTCCTTAT GCCTCTATCA TTCCTCCCTA 
1801 TCTACACTAA CATCCCACGC TCTGAACGCG CGCCCATTAA TACCCTTCTT 
1851 TCCTCCACTC TCCCTGGGAC TCTTGATCAA AGCGCGGCCC TTTCCCCAGC 
1901 CTTAGCGAGG CGCCCTGCAG CCTGGTACGC GCGTGGCGTG GCGGTGGGCG 
1951 CGCAGTGCGT TCTCTGTGTG GAGGGCAGCT GTTCCGCCTG CGATGATTTA 
2001 TACTCACAGG ACAAGGATGC GGTTTGTCAA ACAGTACTGC TACGGAGGAG 
2051 CAGCAGAGAA AGGGAGAGGG TTTGAGAGGG AGCAAAAGAA AATGGTAGGC 
2101 GCGCGTAGTT AATTCATGCG GCTCTCTTAC TCTGTTTACA TCCTAGAGCT 
2151 AGAGTGCTCG GCTGCCCGGC TGAGTCTCCT CCCCACCTTC CCCACCCTCC 
2201 CCACCCTCCC CATAAGCGCC CCTCCCGGGT TCCCAAAGCA GAGGGCGTGG 
2251 GGGAAAAGAA AAAAGATCCT CTCTCGCTAA TCTCCGCCCA CCGGCCCTTT 
2301 ATAATGCGAG GGTCTGGACG GCTGAGGACC CCCGAGCTGT GCTGCTCGCG 
2351 GCCGCCACCG CCGGGCCCCG GCCGTCCCTG GCTCCCCTCC TGCCTCGAGA 
2401 AGGGCAGGGC TTCTCAGAGG CTTGGCGGGA AAAAGAACGG AGGGAGGGAT 
2451 CGCGCTGAGT ATAAAAGCCG GTTTTCGGGG CTTTATCTAA CTCGCTGTAG 
2501 TAATTCCAGC GAGAGGCAGA GGGAGCGAGC GGGCGGCCGG CTAGGGTGGA 
2551 AGAGCCGGGC GAGCAGAGCT GCGCTGCGGG CGTCCTGGGA AGGGAGATCC 
2601 GGAGCGAATA GGGGGCTTCG CCTCTGGCCC AGCCCTCCCG CTGATCCCCC 
2651 AGCCAGCGGT CCGCAACCCT TGCCGCATCC ACGAAACTTT GCCCATAGCA 
2701 GCGGGCGGGC ACTTTGCACT GGAACTTACA ACACCCGAGC AAGGACGCGA 
2751 CTCTCCCGAC GCGGGGAGGC TATTCTGCCC ATTTGGGGAC ACTTCCCCGC 
2801 CGCTGCCAGG ACCCGCTTCT CTGAAAGGCT CTCCTTGCAG CTGCTTAGAC 
2851 GCTGGATTTT TTTCGGGTAG TGGAAAACCA GGTAAGCACC GAAGTCCACT 
2901 TGCCTTTTAA TTTATTTTTT TATCACTTTA ATGCTGAGAT GAGTCGAATG 
2951 CCTAAATAGG GTGTCTTTTC TCCCATTCCT GCGCTATTGA CACTTTTCTC 
3001 AGAGTAGTTA TGGTAACTGG GGCTGGGGTG GGGGGTAATC CAGAACTGGA 
3051 TCGGGGTAAA GTGACTTGTC AAGATGGGAG AGGAGAAGGC AGAGGGAAAA 
3101 CGGGAATGGT TTTTAAGACT ACCCTTTCGA GATTTCTGCC TTATGAATAT 
3151 ATTCACGCTG ACTCCCGGCC GGTCGGACAT TCCTGCTTTA TTGTGTTAAT

A 3.2 kb segment of the c-myc sequence extending downstream of the HindIII 
site (-2329). The strongest SIDD site is in the FUSE region (FBP binding site). 
Detail in the paper: The EMBO Journal Vol. 19, pp. 1034-1044, 2000

Set Profile Type:

Output Control:
dna sequence states
parameter set ensemble quantities